PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G049600.6.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 351aa    MW: 37584 Da    PI: 10.1193
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G049600.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-11158198343
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Sevir.1G049600.6.p 158 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 198
                         67999*************************86555555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-5156209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-8156202No hitNo description
PROSITE profilePS502178.979158202IPR004827Basic-leucine zipper domain
PfamPF001707.4E-9159198IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-7160203No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
PfamPF141441.7E-26244327IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIKEPGGGY DMAEFDQALF LYLNSQDQTS  60
AAHHQDQPQT LNIFPSQPMH IAEPAPKGSM GTSNTAPIAG AGPSKQPPPP SNHPSRPTPA  120
ALKDGKPAGV KREGSSGAAT GSGTPSTSNQ QEGPRTPDAK TLRRLAQNRE AARKSRLRKK  180
AYIQNLETSR IRLSQLEQEL HRSRNQGAVF GGGALSGSNG GLSPEAAWFD MEHARWQEEH  240
GKMMRHLRAA LEAADQQHPA APAPAPAADA QLRQLVDAAA AHHGVLADLK AAVASADAFH  300
LVSGAWASAA ERCFLWIGGF RPSELIKDSR LDRRWRRGWL TYLQQCKGRA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-54AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-54CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_004951578.10.0PREDICTED: transcription factor TGA2-like isoform X3
SwissprotP432734e-55TGA2_ARATH; Transcription factor TGA2
TrEMBLC5XXG41e-131C5XXG4_SORBI; Putative uncharacterized protein Sb04g006500
STRINGSb04g006500.11e-130(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-59bZIP family protein